------------------------------------------------------------------------------------------------------------------------------------ name: log: H:\My Documents\Transfer\X-side Missingness talk\Allison USNews Example\Allison_Example_Stata-to-Mplus.log log type: text opened on: 22 Nov 2010, 10:46:23 . use "H:\My Documents\Transfer\X-side Missingness talk\Allison USNews Example\usnews.dta", clear . do "C:\Users\TNEILA~1\AppData\Local\Temp\STD04000000.tmp" . . ** --> Allison 1 (Default removal of missing x-data - N = 455) <-- ** . . runmplus gradrat csat stufac rmbrd private lenroll, estimator(ML) /// > model(gradrat ON csat stufac rmbrd private lenroll;) /// > auxiliary are act; The model estimation seems to have terminated normally Mplus VERSION 6.1 MUTHEN & MUTHEN 11/22/2010 10:47 AM INPUT INSTRUCTIONS TITLE: Variable List - gradrat : csat : stufac : rmbrd : private : lenroll : DATA: FILE = __000001.dat ; VARIABLE: NAMES = gradrat csat stufac rmbrd private lenroll ; MISSING ARE ALL (-9999) ; ANALYSIS: ESTIMATOR = ML ; OUTPUT: MODEL: gradrat ON csat stufac rmbrd private lenroll ; *** WARNING Data set contains cases with missing on x-variables. These cases were not included in the analysis. Number of cases with missing on x-variables: 826 *** WARNING Data set contains cases with missing on all variables except x-variables. These cases were not included in the analysis. Number of cases with missing on all variables except x-variables: 21 2 WARNING(S) FOUND IN THE INPUT INSTRUCTIONS Variable List - gradrat : csat : stufac : rmbrd : private : lenroll : SUMMARY OF ANALYSIS Number of groups 1 Number of observations 455 Number of dependent variables 1 Number of independent variables 5 Number of continuous latent variables 0 Observed dependent variables Continuous GRADRAT Observed independent variables CSAT STUFAC RMBRD PRIVATE LENROLL Estimator ML Information matrix OBSERVED Maximum number of iterations 1000 Convergence criterion 0.500D-04 Maximum number of steepest descent iterations 20 Maximum number of iterations for H1 2000 Convergence criterion for H1 0.100D-03 Input data file(s) __000001.dat Input data format FREE SUMMARY OF DATA Number of missing data patterns 1 COVARIANCE COVERAGE OF DATA Minimum covariance coverage value 0.100 PROPORTION OF DATA PRESENT Covariance Coverage GRADRAT CSAT STUFAC RMBRD PRIVATE ________ ________ ________ ________ ________ GRADRAT 1.000 CSAT 1.000 1.000 STUFAC 1.000 1.000 1.000 RMBRD 1.000 1.000 1.000 1.000 PRIVATE 1.000 1.000 1.000 1.000 1.000 LENROLL 1.000 1.000 1.000 1.000 1.000 Covariance Coverage LENROLL ________ LENROLL 1.000 THE MODEL ESTIMATION TERMINATED NORMALLY MODEL FIT INFORMATION Number of Free Parameters 7 Loglikelihood H0 Value -1838.653 H1 Value -1838.653 Information Criteria Akaike (AIC) 3691.305 Bayesian (BIC) 3720.148 Sample-Size Adjusted BIC 3697.932 (n* = (n + 2) / 24) Chi-Square Test of Model Fit Value 0.000 Degrees of Freedom 0 P-Value 0.0000 RMSEA (Root Mean Square Error Of Approximation) Estimate 0.000 90 Percent C.I. 0.000 0.000 Probability RMSEA <= .05 0.000 CFI/TLI CFI 1.000 TLI 1.000 Chi-Square Test of Model Fit for the Baseline Model Value 286.313 Degrees of Freedom 5 P-Value 0.0000 SRMR (Standardized Root Mean Square Residual) Value 0.000 MODEL RESULTS Two-Tailed Estimate S.E. Est./S.E. P-Value GRADRAT ON CSAT 0.067 0.006 10.539 0.000 STUFAC -0.123 0.131 -0.939 0.347 RMBRD 2.161 0.709 3.049 0.002 PRIVATE 13.588 1.933 7.029 0.000 LENROLL 2.416 0.953 2.536 0.011 Intercepts GRADRAT -35.024 7.634 -4.588 0.000 Residual Variances GRADRAT 189.445 12.560 15.083 0.000 QUALITY OF NUMERICAL RESULTS Condition Number for the Information Matrix 0.579E-06 (ratio of smallest to largest eigenvalue) Beginning Time: 10:47:27 Ending Time: 10:47:27 Elapsed Time: 00:00:00 MUTHEN & MUTHEN 3463 Stoner Ave. Los Angeles, CA 90066 Tel: (310) 391-9971 Fax: (310) 391-8971 Web: www.StatModel.com Support: Support@StatModel.com Copyright (c) 1998-2010 Muthen & Muthen . . ** --> Allison 2 (Direct ML estimation - N = 1,302) <-- ** . . runmplus gradrat csat stufac rmbrd private lenroll, estimator(ML) /// > model(gradrat ON csat stufac rmbrd private lenroll; csat; stufac; rmbrd; lenroll;) /// > auxiliary are act; The model estimation seems to have terminated normally Mplus VERSION 6.1 MUTHEN & MUTHEN 11/22/2010 10:47 AM INPUT INSTRUCTIONS TITLE: Variable List - gradrat : csat : stufac : rmbrd : private : lenroll : DATA: FILE = __000001.dat ; VARIABLE: NAMES = gradrat csat stufac rmbrd private lenroll ; MISSING ARE ALL (-9999) ; ANALYSIS: ESTIMATOR = ML ; OUTPUT: MODEL: gradrat ON csat stufac rmbrd private lenroll ; csat ; stufac ; rmbrd ; lenroll ; INPUT READING TERMINATED NORMALLY Variable List - gradrat : csat : stufac : rmbrd : private : lenroll : SUMMARY OF ANALYSIS Number of groups 1 Number of observations 1302 Number of dependent variables 1 Number of independent variables 5 Number of continuous latent variables 0 Observed dependent variables Continuous GRADRAT Observed independent variables CSAT STUFAC RMBRD PRIVATE LENROLL Estimator ML Information matrix OBSERVED Maximum number of iterations 1000 Convergence criterion 0.500D-04 Maximum number of steepest descent iterations 20 Maximum number of iterations for H1 2000 Convergence criterion for H1 0.100D-03 Input data file(s) __000001.dat Input data format FREE SUMMARY OF DATA Number of missing data patterns 14 COVARIANCE COVERAGE OF DATA Minimum covariance coverage value 0.100 PROPORTION OF DATA PRESENT Covariance Coverage GRADRAT CSAT STUFAC RMBRD LENROLL ________ ________ ________ ________ ________ GRADRAT 0.925 CSAT 0.562 0.598 STUFAC 0.925 0.598 0.998 RMBRD 0.565 0.366 0.601 0.601 LENROLL 0.923 0.597 0.995 0.601 0.996 PRIVATE 0.925 0.598 0.998 0.601 0.996 Covariance Coverage PRIVATE ________ PRIVATE 1.000 THE MODEL ESTIMATION TERMINATED NORMALLY MODEL FIT INFORMATION Number of Free Parameters 21 Loglikelihood H0 Value -16627.226 H1 Value -16186.739 Information Criteria Akaike (AIC) 33296.452 Bayesian (BIC) 33405.057 Sample-Size Adjusted BIC 33338.350 (n* = (n + 2) / 24) Chi-Square Test of Model Fit Value 880.974 Degrees of Freedom 4 P-Value 0.0000 RMSEA (Root Mean Square Error Of Approximation) Estimate 0.410 90 Percent C.I. 0.388 0.433 Probability RMSEA <= .05 0.000 CFI/TLI CFI 0.000 TLI -0.714 Chi-Square Test of Model Fit for the Baseline Model Value 644.686 Degrees of Freedom 5 P-Value 0.0000 SRMR (Standardized Root Mean Square Residual) Value 0.168 MODEL RESULTS Two-Tailed Estimate S.E. Est./S.E. P-Value GRADRAT ON CSAT 0.065 0.005 12.999 0.000 STUFAC -0.187 0.102 -1.824 0.068 RMBRD 2.123 0.572 3.714 0.000 PRIVATE 15.275 1.239 12.327 0.000 LENROLL 2.813 0.589 4.772 0.000 STUFAC WITH CSAT -192.754 21.108 -9.132 0.000 RMBRD WITH CSAT 69.965 6.008 11.645 0.000 STUFAC -1.716 0.198 -8.657 0.000 LENROLL WITH CSAT 24.025 4.074 5.897 0.000 STUFAC 1.382 0.148 9.308 0.000 RMBRD -0.029 0.043 -0.670 0.503 Means CSAT 959.616 4.109 233.516 0.000 STUFAC 14.860 0.144 103.357 0.000 RMBRD 4.111 0.039 104.105 0.000 LENROLL 6.167 0.028 222.912 0.000 Intercepts GRADRAT -35.060 5.126 -6.839 0.000 Variances CSAT 15479.662 764.804 20.240 0.000 STUFAC 26.876 1.054 25.497 0.000 RMBRD 1.344 0.066 20.218 0.000 LENROLL 0.993 0.039 25.473 0.000 Residual Variances GRADRAT 187.726 8.618 21.783 0.000 QUALITY OF NUMERICAL RESULTS Condition Number for the Information Matrix 0.618E-06 (ratio of smallest to largest eigenvalue) Beginning Time: 10:47:37 Ending Time: 10:47:37 Elapsed Time: 00:00:00 MUTHEN & MUTHEN 3463 Stoner Ave. Los Angeles, CA 90066 Tel: (310) 391-9971 Fax: (310) 391-8971 Web: www.StatModel.com Support: Support@StatModel.com Copyright (c) 1998-2010 Muthen & Muthen . . ** --> Allison 3 (Direct ML estimation with robust SEs - N = 1,302) <-- ** . . runmplus gradrat csat stufac rmbrd private lenroll, estimator(MLR) /// > model(gradrat ON csat stufac rmbrd private lenroll; csat; stufac; rmbrd; lenroll;) /// > auxiliary are act; The model estimation seems to have terminated normally Mplus VERSION 6.1 MUTHEN & MUTHEN 11/22/2010 10:47 AM INPUT INSTRUCTIONS TITLE: Variable List - gradrat : csat : stufac : rmbrd : private : lenroll : DATA: FILE = __000001.dat ; VARIABLE: NAMES = gradrat csat stufac rmbrd private lenroll ; MISSING ARE ALL (-9999) ; ANALYSIS: ESTIMATOR = MLR ; OUTPUT: MODEL: gradrat ON csat stufac rmbrd private lenroll ; csat ; stufac ; rmbrd ; lenroll ; INPUT READING TERMINATED NORMALLY Variable List - gradrat : csat : stufac : rmbrd : private : lenroll : SUMMARY OF ANALYSIS Number of groups 1 Number of observations 1302 Number of dependent variables 1 Number of independent variables 5 Number of continuous latent variables 0 Observed dependent variables Continuous GRADRAT Observed independent variables CSAT STUFAC RMBRD PRIVATE LENROLL Estimator MLR Information matrix OBSERVED Maximum number of iterations 1000 Convergence criterion 0.500D-04 Maximum number of steepest descent iterations 20 Maximum number of iterations for H1 2000 Convergence criterion for H1 0.100D-03 Input data file(s) __000001.dat Input data format FREE SUMMARY OF DATA Number of missing data patterns 14 COVARIANCE COVERAGE OF DATA Minimum covariance coverage value 0.100 PROPORTION OF DATA PRESENT Covariance Coverage GRADRAT CSAT STUFAC RMBRD LENROLL ________ ________ ________ ________ ________ GRADRAT 0.925 CSAT 0.562 0.598 STUFAC 0.925 0.598 0.998 RMBRD 0.565 0.366 0.601 0.601 LENROLL 0.923 0.597 0.995 0.601 0.996 PRIVATE 0.925 0.598 0.998 0.601 0.996 Covariance Coverage PRIVATE ________ PRIVATE 1.000 THE MODEL ESTIMATION TERMINATED NORMALLY MODEL FIT INFORMATION Number of Free Parameters 21 Loglikelihood H0 Value -16627.226 H0 Scaling Correction Factor 3.001 for MLR H1 Value -16186.739 H1 Scaling Correction Factor 2.772 for MLR Information Criteria Akaike (AIC) 33296.452 Bayesian (BIC) 33405.057 Sample-Size Adjusted BIC 33338.350 (n* = (n + 2) / 24) Chi-Square Test of Model Fit Value 560.091* Degrees of Freedom 4 P-Value 0.0000 Scaling Correction Factor 1.573 for MLR * The chi-square value for MLM, MLMV, MLR, ULSMV, WLSM and WLSMV cannot be used for chi-square difference testing in the regular way. MLM, MLR and WLSM chi-square difference testing is described on the Mplus website. MLMV, WLSMV, and ULSMV difference testing is done using the DIFFTEST option. RMSEA (Root Mean Square Error Of Approximation) Estimate 0.327 90 Percent C.I. 0.304 0.350 Probability RMSEA <= .05 0.000 CFI/TLI CFI 0.000 TLI -0.284 Chi-Square Test of Model Fit for the Baseline Model Value 546.568 Degrees of Freedom 5 P-Value 0.0000 SRMR (Standardized Root Mean Square Residual) Value 0.168 MODEL RESULTS Two-Tailed Estimate S.E. Est./S.E. P-Value GRADRAT ON CSAT 0.065 0.005 12.125 0.000 STUFAC -0.187 0.111 -1.688 0.091 RMBRD 2.123 0.622 3.416 0.001 PRIVATE 15.275 1.322 11.555 0.000 LENROLL 2.813 0.674 4.175 0.000 STUFAC WITH CSAT -192.754 19.909 -9.682 0.000 RMBRD WITH CSAT 69.965 6.645 10.529 0.000 STUFAC -1.716 0.204 -8.393 0.000 LENROLL WITH CSAT 24.025 3.677 6.533 0.000 STUFAC 1.382 0.135 10.239 0.000 RMBRD -0.029 0.043 -0.663 0.507 Means CSAT 959.616 3.987 240.707 0.000 STUFAC 14.860 0.144 103.354 0.000 RMBRD 4.111 0.039 104.757 0.000 LENROLL 6.167 0.028 222.903 0.000 Intercepts GRADRAT -35.060 5.166 -6.787 0.000 Variances CSAT 15479.662 895.976 17.277 0.000 STUFAC 26.876 5.370 5.005 0.000 RMBRD 1.344 0.069 19.522 0.000 LENROLL 0.993 0.036 27.351 0.000 Residual Variances GRADRAT 187.726 10.072 18.638 0.000 QUALITY OF NUMERICAL RESULTS Condition Number for the Information Matrix 0.618E-06 (ratio of smallest to largest eigenvalue) Beginning Time: 10:47:39 Ending Time: 10:47:40 Elapsed Time: 00:00:01 MUTHEN & MUTHEN 3463 Stoner Ave. Los Angeles, CA 90066 Tel: (310) 391-9971 Fax: (310) 391-8971 Web: www.StatModel.com Support: Support@StatModel.com Copyright (c) 1998-2010 Muthen & Muthen . . ** --> Allison 4 (Direct ML estimation with Mplus bootstrap SEs - N = 1,302) <-- ** . . /* Currently does not work - developer is investigating why > > runmplus gradrat csat stufac rmbrd private lenroll, analysis(estimator=ML; bootstrap=5000;) /// > model(gradrat ON csat stufac rmbrd private lenroll; csat; stufac; rmbrd; lenroll;) /// > auxiliary are act; /// > cinterval(bcbootstrap) ;/// > > */ . . ** --> Allison 4 (Direct ML estimation with Mplus bootstrap SEs - N = 1,302) <-- ** . . capture runmplus act gradrat csat stufac rmbrd private lenroll, /// > analysis(estimator=ML; bootstrap=50;) /// > model(gradrat ON csat stufac rmbrd private lenroll; /// > csat; stufac; rmbrd; lenroll;) /// > auxiliary are act; /// > cinterval(bcbootstrap) ;/// . . type __000001.out // this is the temporary place runmplus stores output Mplus VERSION 6.1 MUTHEN & MUTHEN 11/22/2010 10:47 AM INPUT INSTRUCTIONS TITLE: Variable List - act : gradrat : csat : stufac : rmbrd : private : lenroll : DATA: FILE = __000001.dat ; VARIABLE: NAMES = act gradrat csat stufac rmbrd private lenroll ; MISSING ARE ALL (-9999) ; ANALYSIS: estimator=ML ; bootstrap=50 ; OUTPUT: CINTERVAL ; MODEL: gradrat ON csat stufac rmbrd private lenroll ; csat ; stufac ; rmbrd ; lenroll ; *** WARNING in MODEL command Variable is uncorrelated with all other variables: ACT *** WARNING in MODEL command At least one variable is uncorrelated with all other variables in the model. Check that this is what is intended. 2 WARNING(S) FOUND IN THE INPUT INSTRUCTIONS Variable List - act : gradrat : csat : stufac : rmbrd : private : lenroll : SUMMARY OF ANALYSIS Number of groups 1 Number of observations 1302 Number of dependent variables 2 Number of independent variables 5 Number of continuous latent variables 0 Observed dependent variables Continuous ACT GRADRAT Observed independent variables CSAT STUFAC RMBRD PRIVATE LENROLL Estimator ML Information matrix OBSERVED Maximum number of iterations 1000 Convergence criterion 0.500D-04 Maximum number of steepest descent iterations 20 Maximum number of iterations for H1 2000 Convergence criterion for H1 0.100D-03 Number of bootstrap draws Requested 50 Completed 50 Input data file(s) __000001.dat Input data format FREE SUMMARY OF DATA Number of missing data patterns 22 COVARIANCE COVERAGE OF DATA Minimum covariance coverage value 0.100 PROPORTION OF DATA PRESENT Covariance Coverage ACT GRADRAT CSAT STUFAC RMBRD ________ ________ ________ ________ ________ ACT 0.548 GRADRAT 0.507 0.925 CSAT 0.375 0.562 0.598 STUFAC 0.547 0.925 0.598 0.998 RMBRD 0.343 0.565 0.366 0.601 0.601 LENROLL 0.547 0.923 0.597 0.995 0.601 PRIVATE 0.548 0.925 0.598 0.998 0.601 Covariance Coverage LENROLL PRIVATE ________ ________ LENROLL 0.996 PRIVATE 0.996 1.000 THE MODEL ESTIMATION TERMINATED NORMALLY MODEL FIT INFORMATION Number of Free Parameters 23 Loglikelihood H0 Value -18316.541 H1 Value -17380.610 Information Criteria Akaike (AIC) 36679.083 Bayesian (BIC) 36798.031 Sample-Size Adjusted BIC 36724.971 (n* = (n + 2) / 24) Chi-Square Test of Model Fit Value 1871.863 Degrees of Freedom 10 P-Value 0.0000 RMSEA (Root Mean Square Error Of Approximation) Estimate 0.378 90 Percent C.I. 0.364 0.393 Probability RMSEA <= .05 0.000 CFI/TLI CFI 0.000 TLI -0.261 Chi-Square Test of Model Fit for the Baseline Model Value 1635.575 Degrees of Freedom 11 P-Value 0.0000 SRMR (Standardized Root Mean Square Residual) Value 0.269 MODEL RESULTS Two-Tailed Estimate S.E. Est./S.E. P-Value GRADRAT ON CSAT 0.065 0.006 11.328 0.000 STUFAC -0.187 0.126 -1.488 0.137 RMBRD 2.123 0.566 3.753 0.000 PRIVATE 15.275 1.136 13.440 0.000 LENROLL 2.813 0.716 3.926 0.000 STUFAC WITH CSAT -192.755 17.476 -11.029 0.000 RMBRD WITH CSAT 69.965 6.309 11.090 0.000 STUFAC -1.716 0.214 -8.027 0.000 LENROLL WITH CSAT 24.025 3.950 6.082 0.000 STUFAC 1.382 0.137 10.092 0.000 RMBRD -0.029 0.043 -0.667 0.505 Means ACT 22.120 0.104 213.508 0.000 CSAT 959.616 4.308 222.772 0.000 STUFAC 14.860 0.141 105.131 0.000 RMBRD 4.111 0.047 88.370 0.000 LENROLL 6.167 0.031 199.602 0.000 Intercepts GRADRAT -35.060 5.424 -6.463 0.000 Variances ACT 6.647 0.421 15.802 0.000 CSAT 15479.689 780.029 19.845 0.000 STUFAC 26.876 4.955 5.424 0.000 RMBRD 1.344 0.074 18.219 0.000 LENROLL 0.993 0.026 37.962 0.000 Residual Variances GRADRAT 187.726 10.725 17.503 0.000 CONFIDENCE INTERVALS OF MODEL RESULTS Lower .5% Lower 2.5% Lower 5% Estimate Upper 5% Upper 2.5% Upper .5% GRADRAT ON CSAT 0.050 0.053 0.055 0.065 0.074 0.076 0.079 STUFAC -0.510 -0.433 -0.394 -0.187 0.020 0.059 0.137 RMBRD 0.666 1.014 1.192 2.123 3.053 3.231 3.580 PRIVATE 12.347 13.047 13.405 15.275 17.144 17.502 18.202 LENROLL 0.967 1.408 1.634 2.813 3.991 4.217 4.658 STUFAC WITH CSAT -237.770 -227.008 -221.503 -192.755 -164.006 -158.501 -147.739 RMBRD WITH CSAT 53.715 57.600 59.587 69.965 80.343 82.331 86.216 STUFAC -2.266 -2.135 -2.067 -1.716 -1.364 -1.297 -1.165 LENROLL WITH CSAT 13.851 16.283 17.528 24.025 30.523 31.767 34.199 STUFAC 1.029 1.113 1.157 1.382 1.607 1.650 1.734 RMBRD -0.139 -0.112 -0.099 -0.029 0.042 0.055 0.082 Means ACT 21.854 21.917 21.950 22.120 22.291 22.324 22.387 CSAT 948.520 951.173 952.530 959.616 966.702 968.059 970.711 STUFAC 14.496 14.583 14.628 14.860 15.093 15.137 15.224 RMBRD 3.991 4.020 4.035 4.111 4.188 4.202 4.231 LENROLL 6.088 6.107 6.116 6.167 6.218 6.228 6.247 Intercepts GRADRAT -49.032 -45.691 -43.983 -35.060 -26.137 -24.428 -21.088 Variances ACT 5.563 5.822 5.955 6.647 7.338 7.471 7.730 CSAT 13470.490 13950.832 14196.541 15479.689 16762.838 17008.547 17488.889 STUFAC 14.113 17.164 18.725 26.876 35.027 36.588 39.639 RMBRD 1.154 1.199 1.223 1.344 1.465 1.489 1.534 LENROLL 0.926 0.942 0.950 0.993 1.036 1.045 1.061 Residual Variances GRADRAT 160.100 166.705 170.083 187.726 205.369 208.747 215.351 Beginning Time: 10:47:42 Ending Time: 10:47:42 Elapsed Time: 00:00:00 MUTHEN & MUTHEN 3463 Stoner Ave. Los Angeles, CA 90066 Tel: (310) 391-9971 Fax: (310) 391-8971 Web: www.StatModel.com Support: Support@StatModel.com Copyright (c) 1998-2010 Muthen & Muthen . end of do-file . log close name: log: H:\My Documents\Transfer\X-side Missingness talk\Allison USNews Example\Allison_Example_Stata-to-Mplus.log log type: text closed on: 22 Nov 2010, 10:47:51 ------------------------------------------------------------------------------------------------------------------------------------